PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016477042.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 491aa    MW: 54124.8 Da    PI: 9.5251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016477042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000146787323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C++C+k F r  nL+ H r H
  XP_016477042.1 67 CEICNKGFQRDQNLQLHRRGH 87
                    *******************88 PP

2zf-C2H212.80.00036142164123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016477042.1 142 WKCEKCSKKYAVQSDWKAHSKTC 164
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-76487No hitNo description
SMARTSM003550.116587IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355130107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.81E-7137162No hitNo description
SMARTSM00355140142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MMSGDVFSFP SSVKAVLPQH ELQTNPNPRP NPSSSKKRRN LPGTPDPDAE VIALSPKSLM  60
ATNRFLCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRNKDE IVKKKVYICP EKTCIHHDAS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESSRI TSVGANNMNF PNINDTLLNQ QSNLHGISQI GTFYRPEFGN  240
GNSLNQQQQK PRLSLWLDQA NNNPLQMSAN SNLFESTTTS GFVDMMQMPS SNVFGSSSTV  300
ANFSLSSSQG TSMAETLSSL YSDSTQNNHL AKSSTPMSAT ALLQKAAQMG STKSNQSTVF  360
SNSFNLMSSS SSSPSNTPTF SSLHSSETTD QKFPKLSQDY TVSLAEGNGG LILCTNFSSS  420
ANTKAINLDQ AIMQTVGMQT PAVPMNMQQG MNNCLTRDFL GIRNEPFLSQ EMAKFASMSS  480
AMGLSHYSSS H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-154HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778699.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_016477042.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-128IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLK4D3K40.0K4D3K4_SOLLC; Uncharacterized protein
STRINGSolyc10g084180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-108C2H2-like zinc finger protein